PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048299m
Common NameCISIN_1g048299mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 460aa    MW: 52044.3 Da    PI: 7.0641
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048299mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS400.91.3e-122674581373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..........sseelaal 81 
                        +++lL++cAe +s+ d+++a++l++ ls ++sp+gd+++Rl++ f +AL+ rl+  + + +   ++ ++t++ +               +al
  orange1.1g048299m  67 MRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLhHANATLLMMNITTTTTATtlpyntttynD---RNAL 155
                        589**************************************************98444455555555555554456665554321...2222 PP

               GRAS  82 kl....fsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetg 162
                        +     +++++P+++fshltaNqaIle+++ g++ +Hi+Dfdi++G+QWp+L+qaL +R       ++pp+lRiTg g+    + e l++tg
  orange1.1g048299m 156 QScylsLNQITPFIRFSHLTANQAILESLQvGQQSIHILDFDIMHGVQWPPLMQALVERFknsnmlQPPPMLRITGTGN----DIEILQRTG 243
                        223567**********************98466**************************976777777***********....9******** PP

               GRAS 163 erLakfAeelgvpfefnvl..vak...rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                        erL kfA++lg++f+f++l  + +   +++   +++L + p+E+laVn++l lh+ll +++++++  + +L+ +k l+P+vv+++e+ea+hn
  orange1.1g048299m 244 ERLLKFAQSLGLRFQFHPLllMNDdptSVAFYLPSALTILPDETLAVNCMLFLHKLL-KDHDTRD-LRLFLHKIKALNPRVVTIAEREASHN 333
                        ******************97633312134444789**********************.5555555.69************************ PP

               GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                        ++ Fl+rf+ea+++y a+fdslea+lp++s+er  vE++++greiv++va+eg++r+erhe++ +W++ l+++G+++vpls +a +qaklll
  orange1.1g048299m 334 HPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLL 425
                        ******************************************************************************************** PP

               GRAS 342 rkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                        r ++ s+gy+++  ++sl+lgW++r+L+svS+W
  orange1.1g048299m 426 RLHYpSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
                        ********************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.05141438IPR005202Transcription factor GRAS
PfamPF035144.6E-12067458IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MLGSLNNTTS SRHDQQQEED PLAAAASSSD LMLQHHQPLH QSHHQYSSSS SSSRVGGLMN  60
SPPAIHMRQL LISCAELFSQ ADFSAAHRLI SILSANSSPY GDSIERLVHQ FIRALSLRLN  120
LHHANATLLM MNITTTTTAT TLPYNTTTYN DRNALQSCYL SLNQITPFIR FSHLTANQAI  180
LESLQVGQQS IHILDFDIMH GVQWPPLMQA LVERFKNSNM LQPPPMLRIT GTGNDIEILQ  240
RTGERLLKFA QSLGLRFQFH PLLLMNDDPT SVAFYLPSAL TILPDETLAV NCMLFLHKLL  300
KDHDTRDLRL FLHKIKALNP RVVTIAEREA SHNHPLFLQR FVEAVDHYGA IFDSLEATLP  360
PNSRERLAVE QVWFGREIVE IVATEGENRK ERHERFDSWE MILRSCGYSN VPLSGYALSQ  420
AKLLLRLHYP SEGYQLQVLN NSLFLGWQNR ALFSVSSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-59694596375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452790.10.0hypothetical protein CICLE_v10008226mg
SwissprotQ9ZWC51e-138SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A067GEP90.0A0A067GEP9_CITSI; Uncharacterized protein
STRINGPOPTR_0012s02710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-133GRAS family protein